Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y _ __init__() (GaPFlow.Database method) (GaPFlow.md.GoldAlkane method) (GaPFlow.md.LennardJones method) (GaPFlow.md.Mock method) (GaPFlow.md.MolecularDynamics method) (GaPFlow.models.BulkStress method) (GaPFlow.models.gp.GaussianProcessSurrogate method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) (GaPFlow.Problem method) (GaPFlow.topography.ElasticDeformation method) (GaPFlow.topography.Topography method) A active_dims (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) add_data() (GaPFlow.Database method) allowed_skips (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) animate() (GaPFlow.Problem method) animate_1d() (in module GaPFlow.viz.animations) animate_1d_gp() (in module GaPFlow.viz.animations) animate_2d() (in module GaPFlow.viz.animations) atol (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) B barus_piezo() (in module GaPFlow.models.viscosity) bayada_chupin() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) build_gp() (GaPFlow.models.BulkStress method) (GaPFlow.models.gp.GaussianProcessSurrogate method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) build_input_files() (GaPFlow.md.GoldAlkane method) (GaPFlow.md.LennardJones method) (GaPFlow.md.Mock method) (GaPFlow.md.MolecularDynamics method) build_template() (in module GaPFlow.md.moltemplate) BulkStress (class in GaPFlow.models) bwr() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) C carreau_shear() (in module GaPFlow.models.viscosity) cfl (GaPFlow.Problem property) config (GaPFlow.Database property) config_fluid() (in module GaPFlow.md.moltemplate) converged (GaPFlow.Problem property) cubic() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) cumtime_infer (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) cumtime_train (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) D Database (class in GaPFlow) database (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) deformation (GaPFlow.topography.Topography property) dh_dx (GaPFlow.topography.Topography property) dh_dy (GaPFlow.topography.Topography property) diffusiveFlux() (in module GaPFlow.integrate) dowson_higginson() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) dp_dx (GaPFlow.models.BulkStress property) (GaPFlow.models.WallStress property) dp_dy (GaPFlow.models.BulkStress property) (GaPFlow.models.WallStress property) dt_crit (GaPFlow.Problem property) dtool_basepath (GaPFlow.md.GoldAlkane property) (GaPFlow.md.LennardJones property) (GaPFlow.md.Mock property) (GaPFlow.md.MolecularDynamics property) dukler_mixture() (in module GaPFlow.models.viscosity) E ElasticDeformation (class in GaPFlow.topography) eos_pressure() (in module GaPFlow.models.pressure) eos_sound_velocity() (in module GaPFlow.models.sound) extra (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) eyring_shear() (in module GaPFlow.models.viscosity) F fix_noise (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) from_string() (GaPFlow.Problem class method) from_yaml() (GaPFlow.Problem class method) full (GaPFlow.models.WallStress property) (GaPFlow.topography.Topography property) G GaPFlow.integrate module GaPFlow.md.moltemplate module GaPFlow.models.pressure module GaPFlow.models.sound module GaPFlow.models.viscosity module GaPFlow.models.viscous module GaPFlow.viz.animations module GaPFlow.viz.plotting module GaussianProcessSurrogate (class in GaPFlow.models.gp) geo (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) get_deformation() (GaPFlow.topography.ElasticDeformation method) get_deformation_underrelax() (GaPFlow.topography.ElasticDeformation method) get_G_real() (GaPFlow.topography.ElasticDeformation method) get_G_real_slices() (GaPFlow.topography.ElasticDeformation method) get_readme_list_local() (GaPFlow.Database method) get_readme_list_remote() (GaPFlow.Database method) GoldAlkane (class in GaPFlow.md) H h (GaPFlow.topography.Topography property) has_mock_md (GaPFlow.Database property) has_multi_output (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) height (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) height_and_slopes (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) hyperbolicFlux() (in module GaPFlow.integrate) I init() (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) init_database() (GaPFlow.models.BulkStress method) (GaPFlow.models.gp.GaussianProcessSurrogate method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) initialize() (GaPFlow.Database method) is_gp_model (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) is_mock (GaPFlow.md.GoldAlkane attribute) (GaPFlow.md.LennardJones attribute) (GaPFlow.md.Mock attribute) (GaPFlow.md.MolecularDynamics attribute), [1] K kernel_lengthscale (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) kernel_variance (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) kinetic_energy (GaPFlow.Problem property) L last_fit_train_size (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) LennardJones (class in GaPFlow.md) lower (GaPFlow.models.WallStress property) M main_file (GaPFlow.md.GoldAlkane attribute) (GaPFlow.md.LennardJones attribute) (GaPFlow.md.Mock attribute) (GaPFlow.md.MolecularDynamics attribute), [1] mass (GaPFlow.Problem property) max_steps (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) mc_adams_mixture() (in module GaPFlow.models.viscosity) md_config (GaPFlow.Database property) Mock (class in GaPFlow.md) module GaPFlow.integrate GaPFlow.md.moltemplate GaPFlow.models.pressure GaPFlow.models.sound GaPFlow.models.viscosity GaPFlow.models.viscous GaPFlow.viz.animations GaPFlow.viz.plotting MolecularDynamics (class in GaPFlow.md) murnaghan_tait() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) N name (GaPFlow.md.GoldAlkane attribute) (GaPFlow.md.LennardJones attribute) (GaPFlow.md.Mock attribute) (GaPFlow.md.MolecularDynamics attribute), [1] (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) noise (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) num_features (GaPFlow.Database property) num_worker (GaPFlow.md.GoldAlkane attribute) (GaPFlow.md.LennardJones attribute) (GaPFlow.md.Mock attribute) (GaPFlow.md.MolecularDynamics attribute), [1] O objective (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) obs_stddev (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) output_path (GaPFlow.Database property) P params (GaPFlow.md.GoldAlkane attribute) (GaPFlow.md.LennardJones attribute) (GaPFlow.md.Mock attribute) (GaPFlow.md.MolecularDynamics attribute), [1] params_init (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) pause_on_high_residual (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) pause_steps (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) perturb_target (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) piezoviscosity() (in module GaPFlow.models.viscosity) plot() (GaPFlow.Problem method) plot_frame() (in module GaPFlow.viz.plotting) plot_frames() (in module GaPFlow.viz.plotting) plot_height() (in module GaPFlow.viz.plotting) plot_history() (in module GaPFlow.viz.plotting) plot_topo() (GaPFlow.Problem method) power_law() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) predict() (GaPFlow.models.BulkStress method) (GaPFlow.models.gp.GaussianProcessSurrogate method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) predictor_corrector() (in module GaPFlow.integrate) Pressure (class in GaPFlow.models) pressure (GaPFlow.models.BulkStress property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Problem (class in GaPFlow) prop (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) Q q (GaPFlow.Problem property) q_has_nan (GaPFlow.Problem property) q_has_negative_density (GaPFlow.Problem property) q_is_valid (GaPFlow.Problem property) R read_output() (GaPFlow.md.GoldAlkane method) (GaPFlow.md.LennardJones method) (GaPFlow.md.Mock method) (GaPFlow.md.MolecularDynamics method) roelands_piezo() (in module GaPFlow.models.viscosity) rtol (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) run() (GaPFlow.md.GoldAlkane method) (GaPFlow.md.LennardJones method) (GaPFlow.md.Mock method) (GaPFlow.md.MolecularDynamics method) (GaPFlow.Problem method) S save_state() (GaPFlow.models.BulkStress method) (GaPFlow.models.gp.GaussianProcessSurrogate method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) set_training_path() (GaPFlow.Database method) shear_rate_avg() (in module GaPFlow.models.viscosity) shear_thinning_factor() (in module GaPFlow.models.viscosity) similarity_check (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) size (GaPFlow.Database property) solution (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) source() (in module GaPFlow.integrate) srate_wall_newton() (in module GaPFlow.models.viscosity) stress (GaPFlow.models.BulkStress property) stress_avg() (in module GaPFlow.models.viscous) stress_bottom() (in module GaPFlow.models.viscous) stress_top() (in module GaPFlow.models.viscous) T tol (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) Topography (class in GaPFlow.topography) training_path (GaPFlow.Database property) trusted (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) U update() (GaPFlow.models.BulkStress method) (GaPFlow.models.Pressure method) (GaPFlow.models.WallStress method) (GaPFlow.Problem method) (GaPFlow.topography.Topography method) update_gradients() (GaPFlow.topography.Topography method) upper (GaPFlow.models.WallStress property) use_active_learning (GaPFlow.models.BulkStress attribute) (GaPFlow.models.gp.GaussianProcessSurrogate attribute) (GaPFlow.models.Pressure attribute) (GaPFlow.models.WallStress attribute) V v_max (GaPFlow.Problem property) v_sound (GaPFlow.models.Pressure property) van_der_waals() (in module GaPFlow.models.pressure) (in module GaPFlow.models.sound) variance (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) W WallStress (class in GaPFlow.models) write() (GaPFlow.Database method) (GaPFlow.Problem method) write_fluid() (in module GaPFlow.md.moltemplate) write_init() (in module GaPFlow.md.moltemplate) write_mixing() (in module GaPFlow.md.moltemplate) write_restart() (in module GaPFlow.md.moltemplate) write_run() (in module GaPFlow.md.moltemplate) write_settings() (in module GaPFlow.md.moltemplate) write_slab() (in module GaPFlow.md.moltemplate) write_solid_data() (in module GaPFlow.md.moltemplate) write_template() (in module GaPFlow.md.moltemplate) X x (GaPFlow.topography.Topography property) X_scale (GaPFlow.Database property) X_shift (GaPFlow.Database property) Xtest (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Xtrain (GaPFlow.Database property) (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Xtrain_target (GaPFlow.Database property) (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Y y (GaPFlow.topography.Topography property) Y_scale (GaPFlow.Database property) Y_shift (GaPFlow.Database property) Yerr (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Yscale (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Yshift (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Ytrain (GaPFlow.Database property) (GaPFlow.models.BulkStress property) (GaPFlow.models.gp.GaussianProcessSurrogate property) (GaPFlow.models.Pressure property) (GaPFlow.models.WallStress property) Ytrain_err (GaPFlow.Database property)